PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092146.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 397aa    MW: 43652.5 Da    PI: 6.9215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-09152175226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kt+lC++f+  GtC++ ++C+FaH+
  XP_011092146.1 152 KTKLCCRFQV-GTCSFNEKCNFAHS 175
                     8*********.*************8 PP

2zf-CCCH34.63.2e-11281307127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ +   G+C++ +rC+FaHgp
  XP_011092146.1 281 WKTRLCNKWESAGYCPFRSRCHFAHGP 307
                     8************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.24E-8148181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112150177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-12151183IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-7152175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014152176IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.188220248IPR000571Zinc finger, CCCH-type
SMARTSM0035634224247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-16277311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-9278312IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6280307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23280308IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7281307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDSHQPSGSP VNNVIEFQSG NSGISFNEDM VLGSSDQAVW ASEDGISNKE ASVNMNSKAN  60
HEESLSQFEV GSELAHKRPT VNGSSDQAVW VSEDDISNKE ASVNMNPKAN HEERLSQFEV  120
ESELTHKRAR NSPLVDLAAS NSSRAFGVLF HKTKLCCRFQ VGTCSFNEKC NFAHSIEELR  180
QPPLNWQKGV AARKEEQGSP LVPREVTQIL LVGSNDETQG CTSEQCMKLC SEEGCPYGEN  240
CNLIHYEDSK NREHLAICLL PGTDGRYRGN RSKSTLNAAN WKTRLCNKWE SAGYCPFRSR  300
CHFAHGPAEL RRYGGGLPIP EAKDSSAYGS KGGAVPTKAS AGAMNAPTSS VPHPYRVGAP  360
SRRLSIMMKR PGETPTRRWK GPESISKVYG DWIDDLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092146.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
RefseqXP_011092155.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
RefseqXP_011092163.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
RefseqXP_011092172.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
TrEMBLA0A068UXL71e-100A0A068UXL7_COFCA; Uncharacterized protein
STRINGVIT_02s0012g01550.t013e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-69C3H family protein